整合微生物组菌剂的提出、研发与应用
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刘波,陈倩倩,王阶平,阮传清,陈燕萍,夏江平,车建美,陈峥,潘志针,文笑,朱育菁,张海峰,郑雪芳
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Proposition, Development and Application of the Integrated Microbiome Agent (IMA)
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Bo LIU,QianQian CHEN,JiePing WANG,ChuanQing RUAN,YanPing CHEN,JiangPing XIA,JianMei CHE,Zheng CHEN,ZhiZhen PAN,Xiao WEN,YuJing ZHU,HaiFeng ZHANG,XueFang ZHENG
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表4 基于宏基因组分析整合菌剂细菌微生物组测定
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Table 4 Determination of bacterial microbiome for the integrated microbiome agent based on metagenome analysis
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样本
Sample | 短序列
Reads | 种类
OTUs | 在0.97的相似度下Under the similarity of 0.97 | Ace指数
Ace index | Chao指数
Chao index | 测序深度指数
Coverage index | 香农多样性指数
Shannon index | 辛普森优势度指数
Simpson index | | g1 | 102575 | 1608 | 1824 (1779, 1882) | 1879 (1809, 1973) | 0.997114 | 5.14 (5.13, 5.15) | 0.0212 (0.0208, 0.0216) | | g2 | 129891 | 1698 | 1922 (1875, 1981) | 1973 (1902, 2068) | 0.997721 | 5.55 (5.54, 5.55) | 0.0101 (0.01, 0.0103) | | g3 | 83279 | 1255 | 1604 (1536, 1689) | 1592 (1511, 1700) | 0.995845 | 4.68 (4.67, 4.70) | 0.0252 (0.0248, 0.0255) | | g4 | 137195 | 1192 | 1381 (1337, 1438) | 1421 (1356, 1512) | 0.998287 | 4.85 (4.85, 4.86) | 0.0187 (0.0185, 0.0189) | | g5 | 119811 | 1711 | 1997 (1942, 2067) | 2047 (1966, 2153) | 0.997087 | 5.11 (5.10, 5.12) | 0.0255 (0.0251, 0.026) | | g6 | 111290 | 1257 | 1566 (1503, 1646) | 1574 (1493, 1683) | 0.997232 | 4.96 (4.95, 4.97) | 0.0153 (0.0151, 0.0155) | | g7 | 113573 | 1564 | 1791 (1744, 1851) | 1817 (1752, 1904) | 0.997385 | 5.19 (5.17, 5.20) | 0.0159 (0.0157, 0.0161) | | 平均值Average | 99701.75 | 1469.29 | 1726.42 | 1757.57 | 0.997239 | 5.0686 | 0.0188 |
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