柑橘U-box基因家族的鉴定及表达分析

李秋月,张亚飞,彭洁,王旭,张志强,戴祥生,江东

Genome Wide Identification and Expression Analysis of the U-box Gene Family in Citrus

LI QiuYue,ZHANG YaFei,PENG Jie,WANG Xu,ZHANG ZhiQiang,DAI XiangSheng,JIANG Dong

表3 PlantCARE预测CcPUB基因家族启动子区顺式作用原件

Table 3 Cis-acting regulatory elements in promoter of U-box gene family predicted by plantCARE

顺式元件 Cis-element 典型序列 Typical sequence 特性 Characteristic 基因 Gene G-box CACGT 光响应 Cis-acting regulatory element involved in light responsiveness CcPUB1、CcPUB3—CcPUB11、CcPUB13—CcPUB17、CcPUB21— CcPUB23、CcPUB25、CcPUB26、CcPUB28—CcPUB37、CcPUB39、CcPUB42— CcPUB45、CcPUB47—CcPUB56 ATCT-motif AATCT 光响应 Part of a conserved DNA module involved in light responsiveness CcPUB7、CcPUB18、CcPUB22、CcPUB23、CcPUB28、CcPUB30、CcPUB31、CcPUB39、CcPUB53、CcPUB55、CcPUB56 ACE AAAACGTTTA 光响应 Cis-acting element involved in light responsiveness CcPUB3、CcPUB10、CcPUB21、CcPUB26、CcPUB32、CcPUB39 LTR CCGAAA 低温反应 Cis-acting element involved in low- temperature responsiveness CcPUB2、CcPUB5、CcPUB8、CcPUB10、CcPUB16、CcPUB17、CcPUB23、CcPUB25、CcPUB26、CcPUB28、CcPUB29、CcPUB32、CcPUB38、CcPUB39、CcPUB42—CcPUB44、CcPUB46、CcPUB56 TGACG-motif TGACG MeJA响应 Cis-acting regulatory element involved in the MeJA-responsiveness CcPUB1—CcPUB6、CcPUB8、CcPUB9、CcPUB11、CcPUB13— CcPUB18、CcPUB23、CcPUB27、CcPUB29、CcPUB31—CcPUB38、CcPUB40—CcPUB44、CcPUB46、CcPUB47、CcPUB50、CcPUB52、CcPUB55、CcPUB56 ABRE GACACGTGGC TACGTG 脱落酸响应 Cis-acting element involved in the abscisic acid responsiveness CcPUB1—CcPUB11、CcPUB13—CcPUB17、CcPUB22、CcPUB23、CcPUB26、CcPUB28—CcPUB30、CcPUB32—CcPUB37、CcPUB39、CcPUB42—CcPUB45、CcPUB47—CcPUB53、CcPUB55、CcPUB56 GARE-motif TCTGTTG, AAACAGA 赤霉素响应 Gibberellin-responsive element CcPUB2、CcPUB5、CcPUB6、CcPUB8、CcPUB9、CcPUB13、CcPUB15、CcPUB16、CcPUB27、CcPUB31、CcPUB45、CcPUB47、 MBS TAACTG MYB结合位点参与干旱诱导 MYB binding site involved in drought- induction CcPUB1、CcPUB4—CcPUB9、CcPUB11、CcPUB14、CcPUB16、CcPUB17、CcPUB21、CcPUB23、CcPUB25—CcPUB27、CcPUB31— CcPUB37、CcPUB39、CcPUB44、CcPUB50、CcPUB51、CcPUB55、CcPUB56 DRE TGGCCGAC 冷和脱水 Regulatory element involved in cold- and dehydration-responsiveness CcPUB4、CcPUB5、CcPUB7、CcPUB8、CcPUB13、CcPUB21、CcPUB23、CcPUB26、CcPUB29、CcPUB37、CcPUB40—CcPUB42、CcPUB44、CcPUB46、CcPUB51、CcPUB56 ERE ATTTTAAA 乙烯响应 Ethylene responsive element CcPUB2—CcPUB9、CcPUB11、CcPUB12、CcPUB14、CcPUB17、CcPUB18、CcPUB21—CcPUB23、CcPUB25、CcPUB26、CcPUB28、CcPUB29、CcPUB31、CcPUB32、CcPUB37—CcPUB42、CcPUB44、CcPUB45、CcPUB47、CcPUB50—CcPUB53、CcPUB56