葡萄LBD基因家族的鉴定与表达分析

何红红,马宗桓,张元霞,张娟,卢世雄,张志强,赵鑫,吴玉霞,毛娟

Identification and Expression Analysis of LBD Gene Family in Grape

HongHong HE,ZongHuan MA,YuanXia ZHANG,Juan ZHANG,ShiXiong LU,ZhiQiang ZHANG,Xin ZHAO,YuXia WU,Juan MAO

表2 葡萄中LBD转录因子家族信息

Table 2 The information of LBD transcription factor family in Vitis vinifera

基因 Gene 基因登录号 Gene accession No. 染色体定位 Chromosome location 长度 Length of CDS (bp) 基因全长 Full length genomic (bp) 分子量 Molecular weight (kD) 等电点 pI 氨基酸 Amino acid 外显子 Exon cDNA全长 FL-cDNA (bp) 拟南芥同源基因Arabidopsis homologous gene 登录号 Accession No. 名称 Gene name E值 E-value VvLBD1 GSVIVT01011895001 Chr.01:3210000..3211373 1158 1374 43.30087 8.96 386 3 1158 AT1G68510 LBD42 7e-05 VvLBD2 GSVIVT01011896001 Chr.01:3202459..3205665 726 1076 26.97486 9.28 242 2 998 AT1G68510 LBD42 7e-05 VvLBD3 GSVIVT01037853001 Chr.03:7098160..7099838 615 1679 22.87014 6.73 205 3 714 AT4G37540 LBD39 1e-09 VvLBD4 GSVIVT01025128001 Chr.06:4180823..4182134 609 1312 22.02887 4.77 202 2 953 AT2G28500 LBD11 8e-14 VvLBD5 GSVIVT01024662001 Chr.06:7971774..7972539 492 766 18.36397 6.40 164 2 644 AT1G31320 LBD4 0.003 VvLBD6 GSVIVT01024592001 Chr.06:8584134..8585865 690 1735 24.92138 8.58 229 3 1529 AT2G30340 LBD13 6e-18 VvLBD7 GSVIVT01028294001 Chr.07:5837981..5838834 699 854 25.72175 5.87 232 2 750 AT2G42430 LBD16 0.018 VvLBD8 GSVIVT01028295001 Chr.07:5846731..5847540 588 810 21.46149 7.54 195 2 588 AT2G42430 LBD16 0.018 VvLBD9 GSVIVT01003547001 Chr.07:14517830..14519654 426 1825 15.69194 8.60 142 2 513 AT5G66870 LBD36 2e-09 VvLBD10 GSVIVT01003548001 Chr.07:14524923..14526703 663 1781 23.96578 9.16 220 2 765 AT5G66870 LBD36 2e-09 VvLBD11 GSVIVT01000141001 Chr.07:15589316..15590604 687 1289 24.96159 8.30 229 2 1167 AT4G37540 LBD39 0.005 VvLBD12 GSVIVT01029979001 Chr.08:2636746..2653598 777 16853 27.99185 5.85 259 4 777 AT3G03760 LBD20 7e-27 VvLBD13 GSVIVT01032752001 Chr.13:1022036..1023024 381 989 14.19636 8.80 127 3 417 AT2G30130 LBD12 4e-09 VvLBD14 GSVIVT01032714001 Chr.13:1310001..1311298 675 1298 24.53103 8.99 225 3 956 AT2G30340 LBD13 2e-11 VvLBD15 GSVIVT01016500001 Chr.13:3355781..3356736 660 955 24.29509 5.08 219 2 849 AT2G42430 LBD16 8e-08 VvLBD16 GSVIVT01016335001 Chr.13:4853462..4854800 594 1339 21.75785 5.67 197 2 677 AT2G28500 LBD11 3e-16 VvLBD17 GSVIVT01016332001 Chr.13:4961089..4962007 498 919 18.35293 8.21 166 2 498 AT2G28500 LBD11 3e-16 VvLBD18 GSVIVT01016329001 Chr.13:4999327..4999957 444 631 16.23288 8.72 148 2 505 AT3G11090 LBD21 8e-04 VvLBD19 GSVIVT01016328001 Chr.13:5001203..5002266 420 1064 15.73712 8.50 140 2 462 AT3G11090 LBD21 8e-04 VvLBD20 GSVIVT01031035001 Chr.14:21210990..21212344 564 1355 20.29311 8.98 187 3 1124 AT1G68510 LBD42 7e-05 VvLBD21 GSVIVT01032415001 Chr.14:27152774..27157752 606 4979 22.07197 8.52 201 3 720 AT3G27650 LBD25 0.003 VvLBD22 GSVIVT01027621001 Chr.15:14983162..14985661 795 2500 28.19431 8.12 264 3 924 AT2G45420 LBD18 2e-21 VvLBD23 GSVIVT01027620001 Chr.15:14992324..14994786 585 2463 21.17114 6.50 195 2 585 AT2G42430 LBD16 1.1 VvLBD24 GSVIVT01018486001 Chr.16:14419741..14420915 672 1175 24.58742 7.65 223 2 672 AT5G66870 LBD36 3e-11 VvLBD25 GSVIVT01010625001 Chr.16:15894465..15895136 462 672 17.36371 9.08 154 2 462 AT3G26620 LBD23 7e-19 VvLBD26 GSVIVT01008284001 Chr.17:3660239..3661508 684 1270 24.77241 8.05 228 3 1035 AT3G02550 LBD41 0.005 VvLBD27 GSVIVT01007677001 Chr.17:10578569..10581053 468 2485 16.93792 6.81 156 3 670 AT5G63090 LOB 3e-22 VvLBD28 GSVIVT01009360001 Chr.18:7746214..7747271 669 1058 24.10543 8.54 222 2 939 AT3G49940 LBD38 3e-07 VvLBD29 GSVIVT01013631001 Chr.Un:1949856..1952420 528 2565 19.30889 7.68 176 2 1646 AT1G16530 LBD3 2e-10 VvLBD30 GSVIVT01006269001 Chr.Un:24370759..24373006 651 2248 23.99094 8.25 217 1 1243 AT1G65620 LBD6 3e-47