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1. 基于SSR分子标记的安徽省茶树遗传多样性分析及核心种质构建
TAO Ling-ling, TING Yu-jie, CHEN Hong-rong, WEN Hui-lin, XIE Hui, LUO Ling-yao, HUANG Ke-lin, ZHU Jun-yan, LIU Sheng-rui, WEI Chao-ling
Journal of Integrative Agriculture    2023, 22 (9): 2719-2728.   DOI: 10.1016/j.jia.2023.07.020
摘要255)      PDF    收藏

茶树是中国主要经济作物之一,安徽省茶树栽培历史悠久具有丰富的种质资源和遗传多样性茶树的高度杂合性导致其种质资源收集、管理及保护等方面工作进展缓慢,并且长期保存管理成本高,因此提高安徽省茶树种质资源的管理质量和效率,构建核心种质迫在眉睫本研究从安徽省6个主要产茶区收集了573份有代表性的茶树基于60SSR分子标记进行系统发育关系、群体结构和主坐标分析。聚类结果显示安徽省573茶树被分5个类群,这些类群分布地区收集样品的地理位置相关,聚类结果PCoA分群结果也基本一致。最后,我们构建了一个由115茶树品种组成的核心种质,占原始种质的20%。核心种质观察到的等位基因数(Na)具有90.9%的保留率,并且核心种质和原始种质的香农信息指数(I)及其他遗传多样性参数之间没有显著性差异所有代表性茶区均保留了部分代表性品种,其中黄山地区保留了39份茶树,占核心种质的33.9%金寨县保留了10份茶树,占核心种质的8.9%PCoA结果表明构建的核心种质均匀的分布在收集的安徽省茶树种质中,说明构建的核心种质能够代表安徽省茶树种质的遗传多样性。本研究对安徽省茶树种质资源的高效保存和利用具有一定的参考价值。

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2. Genome-wide pedigree analysis of elite rice Shuhui 527 reveals key regions for breeding
REN Yun, CHEN Dan, LI Wen-jie, TAO Luo, YUAN Guo-qiang, CAO Ye, LI Xue-mei, DENG Qi-ming, WANG Shi-quan, ZHENG Ai-ping, ZHU Jun, LIU Huai-nian, WANG Ling-xia, LI Ping, LI Shuang-cheng
Journal of Integrative Agriculture    2021, 20 (1): 35-45.   DOI: 10.1016/S2095-3119(20)63256-7
摘要226)      PDF    收藏

杂交水稻为世界粮食的供应做出了重大贡献,而骨干亲本在杂交水稻品种选育中发挥着重要作用。为明确水稻骨干亲本蜀恢527(SH527,Oryza sativa)在育种过程中所利用的关键基因组区域,本研究对其进行了基于系谱的全基因组分析。利用高密度单核苷酸多态性(SNP)阵列对包括SH527、6个亲本品种及17个衍生恢复系在内的24个品种进行了扫描,分析了上游亲本对SH527基因组的独特贡献,确定了SH527及其衍生品种中保守的关键基因组区域。同时,利用多年的产量性状数据和SNP 芯片结果进行全基因组关联分析,发现了一些可能的已知或新的产量性状的关联位点。这项研究初步揭示了SH527育种的关键区域,将为后续育种提供参考。杂交水稻为世界粮食的供应做出了重大贡献,而骨干亲本在杂交水稻品种选育中发挥着重要作用。为明确水稻骨干亲本蜀恢527(SH527,Oryza sativa)在育种过程中所利用的关键基因组区域,本研究对其进行了基于系谱的全基因组分析。利用高密度单核苷酸多态性(SNP)阵列对包括SH527、6个亲本品种及17个衍生恢复系在内的24个品种进行了扫描,分析了上游亲本对SH527基因组的独特贡献,确定了SH527及其衍生品种中保守的关键基因组区域。同时,利用多年的产量性状数据和SNP 芯片结果进行全基因组关联分析,发现了一些可能的已知或新的产量性状的关联位点。这项研究初步揭示了SH527育种的关键区域,将为后续育种提供参考。


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3. Effects of a novel mesoionic insecticide, triflumezopyrim, on the feeding behavior of rice planthoppers, Nilaparvata lugens and Sogatella furcifera (Hemiptera: Delphacidae)
ZHU Jun, SUN Wen-qing, LI Yao, GE Lin-quan, YANG Guo-qing, XU Jian-xiang, LIU Fang
Journal of Integrative Agriculture    2020, 19 (10): 2488-2449.   DOI: 10.1016/S2095-3119(20)63197-5
摘要149)      PDF    收藏
The rice planthoppers, Nilaparvata lugens and Sogatella furcifera, are important sap-sucking pests of rice in Asia.  The mesoionic insecticide triflumezopyrim was previously shown to be highly effective in controlling both N. lugens and S. furcifera.  In this study, electropenetrography (EPG) was used to evaluate the effect of three triflumezopyrim concentrations (LC10, LC50 and LC90) on the feeding behavior of N. lugens and S. furcifera.  EPG signals of planthoppes indicated that there were six different waveforms NP, N1, N2, N3, N4, and N5, which corresponded to non-penetration, stylet penetration into epidermis, salivation, extracellular movement of stylet, sap ingestion in phloem, and water ingestion in xylem during feeding.  Compared to untreated controls, triflumezopyrim at LC50 and LC90 prolonged the duration of the non-penetration period by 105.3 to 333.7%.  The probing frequencies of N. lugens exposed to triflumezopyrim at LC10 and LC50 were significantly increased; however, the probing frequencies of S. furcifera showed a significant decrease when exposed to triflumezopyrim at all concentrations.  Triflumezopyrim exposure prolonged the duration of salivation and shortened the duration of extracellular movement.  The duration of phloem sap ingestion decreased from 37.2 to 77.7% in the LC50 and LC90 treatments, respectively.  Differences in feeding behavior in response to triflumezopyrim and pymetrozine were minimal.  In summary, the results show that the LC50 and LC90 concentrations of triflumezopyrim inhibit the feeding activities of N. lugens and S. furcifera mainly by prolonging the duration of non-penetration and by shortening the duration of phloem sap ingestion, which may foster more efficient use of triflumezopyrim in Asia.
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4. Selectivity and sublethal effects of some frequently-used biopesticides on the predator Cyrtorhinus lividipennis Reuter (Hemiptera: Miridae)
DAI Wei, LI Yao, ZHU Jun, GE Lin-quan, YANG Guo-qing, LIU Fang
Journal of Integrative Agriculture    2019, 18 (1): 124-133.   DOI: 10.1016/S2095-3119(17)61845-8
摘要319)      PDF(pc) (783KB)(226)    收藏

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5. Evolution of Xanthomonas Gene Content: Gene Gain/Loss History and Species Divergence
JIN Gu-lei, ZHANG Guo-qing, ZHU Jun, ZHOU Xue-ping, SUN Guo-chang, LI Bin, ZHU Bo
Journal of Integrative Agriculture    2012, 12 (6): 954-961.   DOI: 10.1016/S1671-2927(00)8618
摘要1616)      PDF    收藏
Horizontal gene transfer (HGT) plays key roles in the evolution of pathogenetic bacteria, especially in pathogenetic associated genes. In this study, the evolutionary dynamics of Xanthomonas at species level were determined by the comparative analysis of the complete genomes of 15 Xanthomonas strains. A concatenated multiprotein phyletic pattern and a dataset with Xanthomonas clusters of orthologous genes were constructed. Mathematical extrapolation estimates that the core genome will reach a minimum of about 1 547 genes while the pan-genome will increase up to 22 624 genes when sequencing 1 000 genomes. The HGT extent in this genus was assessed by using a Markov-based probabilistic method. The reconstructed gene gain/loss history, which contained several features consistent with biological observations, showed that nearly 60% of the Xanthomonas genes were acquired by HGT. A large fraction of variability was in the clade ancestor nodes and “leaves of the tree”. Coexpression analysis suggested that the pathogenic and metabolic variation between Xanthomonas oryzae pv. oryzicola and Xanthomonas oryzae pv. oryzae might due to recently-transferred genes. Our results strongly supported that the gene gain/loss may play an important role in divergence and pathogenicity variation of Xanthomonas species.
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