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1. 基于单细胞转录组测序的公牛精子发生过程中动态转录图谱及新标记基因分析
Yuan Gao, Fuxia Bai, Qi Zhang, Xiaoya An, Zhaofei Wang, Chuzhao Lei, Ruihua Dang
Journal of Integrative Agriculture    2024, 23 (7): 2362-2378.   DOI: 10.1016/j.jia.2023.04.036
摘要214)      PDF    收藏
睾丸是精子发生的重要器官,正常的睾丸发育是种公牛优良繁殖性能的基础,此过程涉及到生殖细胞和体细胞之间复杂的相互作用。然而,睾丸细胞的异质性阻碍了牛睾丸发育机制的研究。研究以安格斯牛为研究对象,利用 scRNA-seq技术对性成熟前后安格斯牛睾丸细胞进行测序分析探讨公牛睾丸发育的转录机制。本研究利用Seurat包对数据进行过滤质控标准化降维聚类青春期前后的睾丸细胞进行差异基因分析, 利用KOBAS进行富集分析, 利用Monocle包对生精细胞进行拟时分析, 最利用FISH对标记基因进行验证。睾丸样本经过质控筛选后得到青春期前及青春期牛睾丸细胞共11083;经过降维、聚类等分析过程后,共得到12睾丸细胞亚群,其中包括9个体细胞亚群(未成熟支持细胞、成熟支持细胞、间质祖细胞、间质细胞、管周肌细胞、T细胞、巨噬细胞、平滑肌细胞、内皮细胞3个细胞亚群(精原细胞、精母细胞精子细胞),不同样本之间具有明显的细胞异质性;进一步将睾丸生精细胞进行聚类分析,获得13精原干细胞1期、精原干细胞2期、正在分化的精原细胞、已分化精原细胞、细线期、偶线期、粗线期、双线期次级精母细胞期、圆型精子、延长型精子1期延长型精子2期、未成熟精子);通过Monocle算法,成功构建了生精细胞系的拟时分化轨迹;并筛选出牛睾丸不同类群细胞的特异标记基因,例如:精原干细胞标记基因GRAF2MORC1,分化的精原细胞标记基因HJURPTCF19,代表未成熟支持细胞标记基因ARSE成熟支持细胞标记基因CLEC12B间质细胞标记基因LOC112441470等。综上所述,研究揭示了牛性成熟过程中生殖细胞的动态变化,并提出牛睾丸细胞独特的标记基因,解释牛睾丸发育和精子生成的机制提供了理论依据,为牛青春期的生殖细胞及体细胞的发育提供了新的见解,同时也为后期研究提供了宝贵的数据资源。
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2. Elimination of ceftiofur hydrochloride residue in postpartum cows’ milk after intramammary infusing at dry-off
KANG Ji-jun, LIU Yi-ming, ZHAO Lei-lei, Xu Fei, CHEN Xiao-jie, YAN Xing, LI Xiu-bo
Journal of Integrative Agriculture    2018, 17 (06): 1234-1240.   DOI: 10.1016/S2095-3119(17)61703-9
摘要425)      PDF    收藏
The purpose of this study was to investigate the residue elimination of ceftiofur hydrochloride in milk of postpartum cows after intramammary infusing at dry-off.  An ultra-high performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) method was developed and validated to detect ceftiofur hydrochloride residue in milk.  Through preprocessing, ceftiofur hydrochloride was derivatized into a more stable compound dedfuroyl ceftiofur acetamide (DCA) for further analysis.  The linear range of DCA was 0.1 to 50 μg kg–1.  Average recoveries of DCA were 82.52–105.86%.  The intra-day and inter-day coefficients of variation (CV) were 2.95–9.82 and 6.41–7.43%, respectively.  The limit of detection (LOD) and limit of quantitation (LOQ) scores were 0.05 and 0.1 μg kg–1, respectively.  These parameters showed this method was reliable and valid.  Twelve cows were administrated 10 mL ceftiofur hydrochloride by intramammary infusion (corresponding to 500 mg ceftiofur) to each udder after the last milking before the dry-off period.  Milk was collected from each udder of cow at 12, 24, 36, 48, 60 and 72 h after calving and was mixed for each time point and each cow, then subjected to UPLC-MS/MS analysis.  The results showed, the DCA concentrations in all milk samples were less than LOQ and the maximum residue limit (MRL) 100 μg kg–1, which suggested the withdrawal time of ceftiofur hydrochloride intramammary infusion used for preventing and curing mastitis in dry cows was 0 day.  The study provided guidance for the clinical applications of ceftiofur hydrochloride intramammary infusion (dry cow). 
 
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3. Effect of acid phosphatase produced by Trichoderma asperellum Q1 on growth of Arabidopsis under salt stress
ZHAO Lei, LIU Qun, ZHANG Ya-qing, CUI Qing-yu, LIANG Yuan-cun
Journal of Integrative Agriculture    2017, 16 (06): 1341-1346.   DOI: 10.1016/S2095-3119(16)61490-9
摘要931)      PDF    收藏
Salt stress is a major environmental factor that inhibits crop growth.  Trichoderma spp. are the most efficient biocontrol fungi and some of the strains can stimulate plant growth.  Phosphate solubilization is known as one of the main mechanisms in promoting plant growth, but the underlying mechanisms of phosphate solubilization in the salinity still need to be explored.  The Trichoderma asperellum Q1 isolated and identified in our lab is a beneficial rhizosphere biocontrol fungus with a high phosphate solubilization activity.  It could produce acid and alkaline phosphatases when using insoluble organic phosphorus as the sole phosphorus source, the salt stress increased the phosphorus-solubilization ability of the strain and the activities of the two enzymes.  Furthermore, an acid phosphatase was purified from the fermentation broth by ammonium sulphate precipitation, ion-exchange, and gel filtration chromatography.  Its molecular weight was 55 kDa as determined by SDS-PAGE.  The purified acid phosphatase was used to investigate growth performance of Arabidopsis thaliana by plate assay and the result showed that it contributed to Arabidopsis growth by transforming organic phosphate into a soluble inorganic form under salt stress.  To our knowledge, this is the first report on acid phosphatase purification from T. asperellum and its function in regulation of plant growth under salt stress.
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4. Effects of phosphate solubilization and phytohormone production of Trichoderma asperellum Q1 on promoting cucumber growth under salt stress
ZHAO Lei, ZHANG Ya-qing
Journal of Integrative Agriculture    2015, 14 (8): 1588-1597.   DOI: 10.1016/S2095-3119(14)60966-7
摘要2047)      PDF    收藏
Salinity is one of the major abiotic stresses limiting crop growth and yield. This study investigated the underlying mechanisms of Trichoderma asperellum Q1 in promoting cucumber growth under salt stress, including the abilities of the strain to solubilize phosphate and to produce phytohormone. The results showed that T. asperellum Q1 could solubilize inorganic or organic phosphate and the activities of phosphatases and phytase could be detected in the culture supernatant. In hydroponic experiments, the growth of cucumber seedlings was increased in the hydroponic system treated by culture filtrate of strain Q1 with tricalcium phosphate or calcium phytate under salt stress. This strain also exhibited the ability to produce indole acetic acid (IAA), gibberellic acid (GA) and abscisic acid (ABA) in liquid medium without any inducers. The levels of those three phytohormones in cucumber seedling leaves also increased after inoculated with this strain, along with increased root growth and root activities of the plant. These results demonstrated the mechanisms of T. asperellum Q1 in alleviating the suppression effect of salt stress involving the change of phytohormone levels in cucumber plant and its ability of phosphate solubilization.
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5. 391份中国家驴全基因组重测序数据分析揭示其群体遗传结构与适应性性状遗传基础
Ge Yang, Yujiang Sun, Zhaofei Wang, Cong Li, Xiangqin Zhai, Jiaqiang Zhang, Halima Jafari, Gang Ren, Chuzhao Lei, Ruihua Dang, Shuqin Liu
Journal of Integrative Agriculture    DOI: 10.1016/j.jia.2025.02.016
录用日期: 2025-02-18