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1.
De novo
assembly of
Zea nicaraguensis
root transcriptome identified 5 261 full-length transcripts
JIANG Wei, LIU Hai-lan, WU Yuan-qi, ZHANG Su-zhi, LIU Jian, LU Yan-li, TANG Qi-lin, RONG Ting-zhao
Journal of Integrative Agriculture 2016, 15 (
06
): 1207-1217. DOI:
10.1016/S2095-3119(15)61153-4
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1194
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Zea nicaraguensis
, a wild relative of cultivated maize (
Zea mays
subsp. mays), is considered to be a valuable germplasm to improve the waterlogging tolerance of cultivated maize. Use of reverse genetic-based gene cloning and function verification to discover waterlogging tolerance genes in
Z. nicaraguensis
is currently impractical, because little gene sequence information for
Z. nicaraguensis
is available in public databases. In this study,
Z. nicaraguensis
seedlings were subjected to simulated waterlogging stress and total RNAs were isolated from roots stressed and non-stressed controls. In total, 80 mol L
–1
Illumina 100-bp paired-end reads were generated.
De novo
assembly of the reads generated 81 002 final non-redundant contigs, from which 5 261 full-length transcripts were identified. Among these full-length transcripts, 3 169 had at least one Gene Ontology (GO) annotation, 2 354 received cluster of orthologous groups (COG) terms, and 1 992 were assigned a Kyoto encyclopedia of genes and genomes (KEGG) Orthology number. These sequence data represent a valuable resource for identification of
Z. nicaraguensis
genes involved in waterlogging response.
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2.
Perennial aneuploidy as a potential material for gene introgression between maize and Zea perennis
FU Jie, YANG Xiu-yan, CHENG Ming-jun, Lü Gui-hua, WANG Pei, WU Yuan-qi, ZHENG Ming-min, ZHOU Shu-feng, RONG Ting-zhao, TANG Qi-lin
Journal of Integrative Agriculture 2015, 14 (
5
): 839-846. DOI:
10.1016/S2095-3119(14)60874-1
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2433
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Hybridization, which allows for gene flow between crops, is difficult between maize and Zea perennis. In this study, we aim to initiate and study gene flow between maize and Z. perennis via a special aneuploid plant (MDT) derived from an interspecific hybrid of the two species. The chromosome constitution and morphological characters of MDT as well as certain backcross progenies were examined. Results from genomic in situ hybridization (GISH) indicate that aneuploid MDT consisted of nine maize chromosomes and 30 Z. perennis chromosomes. The backcross progenies of MDT×maize displayed significant diversity of vegetative and ear morphology; several unusual plants with specific chromosome constitution were founded in its progenies. Some special perennial progeny with several maize chromosomes were obtained by backcrossing MDT with Z. perennis, and the first whole chromosome introgression from maize to Z. perennis was detected in this study. With this novel material and method, a number of maize-tetraploid teosinte addition or substitution lines can be generated for further study, which has great significance to maize and Z. perennis genetic research, especially for promoting introgression and transferring desirable traits.
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3.
Combining Ability and Parent-Offspring Correlation of Maize (Zea may L.) Grain b-Carotene Content with a Complete Diallel
LI Run, XIAO Lan-hai, WANG Jing, LU Yan-li, RONG Ting-zhao, PAN Guang-tang, WU Yuan-qi, TANGQilin, LAN Hai, CAO Mo-ju
Journal of Integrative Agriculture 2013, 12 (
1
): 19-26. DOI:
10.1016/S2095-3119(13)60201-4
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1636
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Vitamin A deficiency has become a worldwide problem. Biofortified foods can potentially be an inexpensive, locally adaptable, and long-term solution to dietary-nutrient deficiency. In order to improve the b-carotene content in maize grain by breeding and minimize vitamin A deficiency, a complete diallel cross was designed with eight inbred lines of maize, and 64 combinations were obtained in this study. The experimental combinations were planted in Yunnan and Sichuan provinces, respectively, with a random complete block design. The b-carotene contents in the grains of the experimental materials were analyzed by high-performance liquid chromatography. Among the tested materials, the effect difference of general combining ability of the b-carotene content was significant; however, the effect difference of the special combining ability and the reciprocal effect were not significant. The b-carotene content of maize grain was not influenced significantly by the cross and the reciprocal cross. There was a significant correlation about the b-carotene content in the maize grains between the F1 and their parents. The combinations with high b-carotene content were obviously influenced by the environment, and the mean value of b-carotene content for the experimental materials planted in Ya’an of Sichuan was higher than that planted in Yuanjiang of Yunnan, with the results being significant at the 0.01 level.
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4.
Yield Stability of Maize Hybrids Evaluated in National Maize Cultivar RegionalTrials in Southwestern China Using Parametric Methods
LIU Yong-jian, WEI Bing, HU Er-liang, WU Yuan-qi , HUANG Yu-bi
Journal of Integrative Agriculture 2011, 10 (
9
): 1323-1335. DOI:
10.1016/S1671-2927(11)60125-9
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1596
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Assessment of yield stability is an important issue for maize (Zea mays L.) cultivar evaluation and recommendation. Manyparametric procedures are available for stability analysis, each of them allowing for different interpretations. The objectiveof the present study was to assess yield stability of maize hybrids evaluated in the National Maize Cultivar Regional Trialsin southwestern China using 20 parametric stability statistics proposed by various authors at different times, and toinvestigate their interrelationships. Two yield datasets were obtained from the 2003 and 2004 national maize cultivarregional trials in southwestern China. A combined analysis of variance, stability statistics, and rank correlations amongthese stability statistics were determined. Effects of location, cultivar, and cultivar by location interaction were highlysignificant (P<0.01). Different stability statistics were used to determine the stability of the studied cultivars. Cultivarmean yield (Y) was significantly correlated to the Lin and Binns stability statistic (LP, r=0.98** and 0.97** for 2003 and 2004trials, respectively) and desirability index (HD, r=0.38 and 0.84** for the 2003 and 2004 trials, respectively). The statisticsLP and HD would be useful for simultaneously selecting for high yield and stability. Based on a principal componentanalysis, the parametric stability statistics grouped as four distinct classes that corresponded to different agronomic andbiological concepts of stability.
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5.
Identification of QTLs for Yield-Related Traits in the Recombinant Inbred Line Population Derived from the Cross Between a Synthetic Hexaploid Wheat- Derived Variety Chuanmai 42 and a Chinese Elite Variety Chuannong 16
TANG Yong-lu, LI Jun, WU Yuan-qi, WEI Hui-ting, LI Chao-su, YANG Wu-yun , CHEN Fang
Journal of Integrative Agriculture 2011, 10 (
11
): 1665-1680. DOI:
10.1016/S1671-2927(11)60165-X
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3215
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Synthetic hexaploid wheat (SHW) represents a valuable source of new resistances to a range of biotic and abiotic stresses. A recombinant inbred line (RIL) population with 127 recombinant inbred lines derived from a SHW-derived variety Chuanmai 42 crossing with a Chinese spring wheat variety Chuannong 16 was used to map QTLs for agronomic traits including grain yield, grains per square meter, thousand-kernel weight, spikes per square meter, grain number per spike, grains weight per spike, and biomass yield. The population was genotyped using 184 simple-sequence repeat (SSR) markers and 34 sequence-related amplified polymorphism (SRAP) markers. Of 76 QTLs (LOD>2.5) identified, 42 were found to have a positive effect from Chuanmai 42. The QTL QGy.saas-4D.2 associated with grain yield on chromosome 4D was detected in four of the six environments and the combined analysis, and the mean yield, across six environments, of individuals carrying the Chuanmai 42 allele at this locus was 8.9% higher than that of those lines carrying the Chuannong 16 allele. Seven clusters of the yield-coincident QTLs were detected on 1A, 4A, 3B, 5B, 4D, and 7D.
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