Breuninger H, Rikirsch E, Hermann M, Ueda M, Laux T. 2008. Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Developmental Cell, 14, 867–876.
Cao Y, Han Y, Meng D, Li G, Li D, Abdullah M, Jin Q, Lin Y, Cai Y. 2017. Genome-wide analysis suggests the relaxed purifying selection affect the evolution of WOX genes in Pyrus bretschneideri, Prunus persica, Prunus mume, and Fragaria vesca. Frontiers in Genetics, 8, 78.
Chen C, Chen H, Zhang Y, Thomas H R, Frank M H, He Y, Xia R. 2020. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13, 1194–1202.
Cheng S, Tan F, Lu Y, Liu X, Li T, Yuan W, Zhao Y, Zhou D X. 2018. WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice. Nucleic Acids Research, 46, 2356–2369.
Daccord N, Celton J M, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro E A, Gouzy J, Rees D J G, Guérif P, Muranty H, Durel C E, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, et al. 2017. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genetics, 49, 1099–1106.
Denis E, Kbiri N, Mary V, Claisse G, Conde E S N, Kreis M, Deveaux Y. 2017. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant Journal, 90, 560–572.
Deyhle F, Sarkar A K, Tucker E J, Laux T. 2007. WUSCHEL regulates cell differentiation during anther development. Developmental Biology, 302, 154–159.
Etchells J P, Provost C M, Mishra L, Turner S R. 2013. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation. Development, 140, 2224–2234.
Gambino G, Minuto M, Boccacci P, Perrone I, Vallania R, Gribaudo I. 2011. Characterization of expression dynamics of WOX homeodomain transcription factors during somatic embryogenesis in Vitis vinifera. Journal of Experimental Botany, 62, 1089–1101.
van der Graaff E, Laux T, Rensing S A. 2009. The WUS homeobox-containing (WOX) protein family. Genome Biology, 10, 248.
Gross-Hardt R, Lenhard M, Laux T. 2002. WUSCHEL signaling functions in interregional communication during Arabidopsis ovule development. Genes & Development, 16, 1129–1138.
Guan C, Wu B, Yu T, Wang Q, Krogan N T, Liu X, Jiao Y. 2017. Spatial auxin signaling controls leaf flattening in Arabidopsis. Current Biology, 27, 2940–2950.
Haecker A, Gross-Hardt R, Geiges B, Sarkar A, Breuninger H, Herrmann M, Laux T. 2004. Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development, 131, 657–668.
Han Y, Zheng D, Vimolmangkang S, Khan M A, Beever J E, Korban S S. 2011. Integration of physical and genetic maps in apple confirms whole-genome and segmental duplications in the apple genome. Journal of Experimental Botany, 62, 5117–5130.
Hirakawa Y, Kondo Y, Fukuda H. 2010. TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis. Plant Cell, 22, 2618–2629.
Honda E, Yew C L, Yoshikawa T, Sato Y, Hibara K I, Itoh J I. 2018. LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEBOX3 gene family, regulates lateral organ development differentially from other paralogs, NARROW LEAF2 and NARROW LEAF3 in rice. Plant and Cell Physiology, 59, 376–391.
Hu X, Xu L. 2016. Transcription factors WOX11/12 directly activate WOX5/7 to promote root primordia initiation and organogenesis. Plant Physiology, 172, 2363–2373.
Ji J, Strable J, Shimizu R, Koenig D, Sinha N, Scanlon M J. 2010. WOX4 promotes procambial development. Plant Physiology, 152, 1346–1356.
Kitagawa M, Jackson D. 2019. Control of meristem size. Annual Review of Plant Biology, 70, 269–291.
Kong D, Hao Y, Cui H. 2016. The WUSCHEL related homeobox protein WOX7 regulates the sugar response of lateral root development in Arabidopsis thaliana. Molecular Plant, 9, 261–270.
Kong X, Lu S, Tian H, Ding Z. 2015. WOX5 is shining in the root stem cell niche. Trends in Plant Science, 20, 601–603.
Kucukoglu M, Nilsson J, Zheng B, Chaabouni S, Nilsson O. 2017. WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytologist, 215, 642–657.
Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874.
Laux T, Mayer K F, Berger J, Jurgens G. 1996. The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development, 122, 87–96.
Lescot M, Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouze P, Rombauts S. 2002. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325–327.
Li M, Wang R, Liu Z, Wu X, Wang J. 2019. Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization. BMC Genomics, 20, 317.
Li R, Ge H, Dai Y, Yuan L, Liu X, Sun Q, Wang X. 2019. Genome-wide analysis of homeobox gene family in apple (Malus domestica Borkh.) and their response to abiotic stress. Journal of Genetics, 98, 13.
Liu B, Wang L, Zhang J, Li J, Zheng H, Chen J, Lu M. 2014. WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation. BMC Genomics, 15, 296.
Liu J, Hu X, Qin P, Prasad K, Hu Y, Xu L. 2018. The WOX11–LBD16 pathway promotes pluripotency acquisition in callus cells during de novo shoot regeneration in tissue culture. Plant and Cell Physiology, 59, 734–743.
Liu J, Sheng L, Xu Y, Li J, Yang Z, Huang H, Xu L. 2014. WOX11 and 12 are involved in the first-step cell fate transition during de novo root organogenesis in Arabidopsis. Plant Cell, 26, 1081–1093.
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods, 25, 402–408.
Nakata M, Okada K. 2012. The three-domain model: A new model for the early development of leaves in Arabidopsis thaliana. Plant Signaling & Behavior, 7, 1423–1427.
Nic-Can G I, López-Torres A, Barredo-Pool F, Wrobel K, Loyola-Vargas V M, Rojas-Herrera R, De-la-Peña C. 2013. New insights into somatic embryogenesis LEAFY COTYLEDON1, BABY BOOM1 and WUSCHEL-RELATED HOMEOBOX4 are epigenetically regulated in Coffea canephora. PLoS ONE, 8, e72160.
Niu H, Liu X, Tong C, Wang H, Li S, Lu L,Pan Y, Zhang X, Weng Y, Li Z. 2018. The WUSCHEL-related homeobox1 gene of cucumber regulates reproductive organ development. Journal of Experimental Botany, 69, 5373–5387.
Niu L, Lin H, Zhang F, Watira T W, Li G, Tang Y, Wen J, Ratet P, Mysore K S, Tadege M. 2015. LOOSE FLOWER, a WUSCHEL-like homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula. Plant Journal, 81, 480–492.
Ohmori Y, Tanaka W, Kojima M, Sakakibara H, Hirano H Y. 2013. WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice. Plant Cell, 25, 229–241.
Park S O, Zheng Z, Oppenheimer D G, Hauser B A. 2005. The PRETTY FEW SEEDS2 gene encodes an Arabidopsis homeodomain protein that regulates ovule development. Development, 132, 841–849.
Romera-Branchat M, Ripoll J J, Yanofsky M F, Pelaz S. 2013. The WOX13 homeobox gene promotes replum formation in the Arabidopsis thaliana fruit. Plant Journal, 73, 37–49.
Shimizu R, Ji J, Kelsey E, Ohtsu K, Schnable P S, Scanlon M J. 2009. Tissue specificity and evolution of meristematic WOX3 function. Plant Physiology, 149, 841–850.
Skylar A, Hong F, Chory J, Weigel D, Wu X. 2010. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. Development, 137, 541–549.
Suer S, Agusti J, Sanchez P, Schwarz M, Greb T. 2011. WOX4 imparts auxin responsiveness to cambium cells in Arabidopsis. Plant Cell, 23, 3247–3259.
Ueda M, Zhang Z, Laux T. 2011. Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Developmental Cell, 20, 264–270.
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar S K, Troggio M, Pruss D. 2010. The genome of the domesticated apple (Malus×domestica Borkh.). Nature Genetics, 42, 833.
Wu X, Chory J, Weigel D. 2007. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Developmental Biology, 309, 306–316.
Wu X, Dabi T, Weigel D. 2005. Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance. Current Biology, 15, 436–440.
Xu M, Xie W, Huang M. 2015. Two WUSCHEL-related HOMEOBOX genes, PeWOX11a and PeWOX11b, are involved in adventitious root formation of poplar. Physiologia Plantarum, 155, 446–456.
Xu X, Li X, Hu X, Wu T, Wang Y, Xu X, Zhang X, Han Z. 2017. High miR156 expression is required for auxin-induced adventitious root formation via MxSPL26 independent of PINs and ARFs in Malus xiaojinensis. Frontiers in Plant Science, 8, 1059.
Yang Z, Gong Q, Qin W, Yang Z, Cheng Y, Lu L, Ge X, Zhang C, Wu Z, Li F. 2017. Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses. BMC Plant Biology, 17, 113.
Zhang N, Huang X, Bao Y, Wang B, Liu L J, Dai L, Chen J, An X, Sun Y, Peng D. 2015. Genome-wide identification and expression profiling of WUSCHEL-related homeobox (WOX) genes during adventitious shoot regeneration of watermelon (Citrullus lanatus). Acta Physiologiae Plantarum, 37, 224.
Zhang N, Yu H. 2018. A core regulatory pathway controlling rice tiller angle mediated by the LAZY1-dependent asymmetric distribution of auxin. Plant Cell, 30, 1461–1475.
Zhang S, Feng M, Chen W, Zhou X, Lu J, Wang Y, Li Y, Jiang C Z. 2019. In rose, transcription factor PTM balances growth and drought survival via PIP2;1 aquaporin. Nature Plants, 5, 290–299.
Zhang T, Li R, Xing J, Yan L, Wang R, Zhao Y. 2018. The YUCCA-Auxin-WOX11 module controls crown root development in rice. Frontiers in Plant Science, 9, 523.
Zhou S, Jiang W, Long F, Cheng S. 2017. Rice homeodomain protein WOX11 recruits a histone acetyltransferase complex to establish programs of cell proliferation of crown root meristem. Plant Cell, 29, 1088–1104.
Zhuang L L, Ambrose M, Rameau C, Weng L, Yang J, Hu X H, Luo D, Li X. 2012. LATHYROIDES, encoding a WUSCHEL-related homeobox1 transcription factor, controls organ lateral growth, and regulates tendril and dorsal petal identities in garden pea (Pisum sativum L.). Molecular Plant, 5, 1333–1345.
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