JIA-2019-11

2452 CHEN Bing-ru et al. Journal of Integrative Agriculture 2019, 18(11): 2446–2456 Table 2 Single nucleotide polymorphism (SNPs) and candidate genes significantly associated with starch content 1) SNP ID Allele P -value Associate gene Gene location The distance SNP away of candidate gene (kb) GO term 2) PFAM annotation Chr1.74870574 A, G 2.36E-08 Sobic.001G475600 74788578– 74792376 78.198 Chloroplast C ; photosynthetic electron transport in photosystem II P ; photosystem II assembly P ; integral component of membrane C UbiA prenyltransferase family Chr5.11190345 C, T 3.29E-07 Sobic.005G084100 11366416– 11370715 176.071 Protein kinase activity F ; ATP binding F ; plasma membrane C ; protein phosphorylation P ; cytoplasmic membrane- bounded vesicle C Protein tyrosine kinase Chr6.12508174 T, C 1.83E-07 Sobic.006G036500.1 12446395– 12449252 58.922 Chloroplast thylakoid, lumen, stroma C ; pentose-phosphate shunt, photosynthetic electron transport in photosystem I, chloroplast relocation, thylakoid membrane organization photosystem II assembly P Chr6.57714612 G, A 3.42E-07 Sobic.006G234100 57574088– 57577745 136.867 Chloroplast C ; chlorophyll biosynthetic process P ; NADP binding F ; oxidation- reduction process F NAD binding domain of 6-phosphogluconate dehydrogenase Chr6.57714612 G, A 3.42E-07 Sobic.006G234700 57643053– 57648782 65.830 chloroplast C ; phosphotransferase activity, alcohol group as acceptor F ; carbohydrate kinase activity F ; carbohydrate phosphorylation P FGGY family of carbohydrate kinases, Chr6.57714612 G, A 3.42E-07 Sobic.006G235300 57694800– 57696355 18.257 chloroplast thylakoid membrane C ; photosynthesis, light harvesting P ; chlorophyll II binding F Chlorophyll A–B binding protein Chr6.57714612 G, A 3.42E-07 Sobic.006G235350 57696523– 57699060 15.552 pentose-phosphate shunt P ; chloroplast thylakoid C ; membrane C Chr6.57714612 G, A 3.42E-07 Sobic.006G236700 57815633– 57822442 101.021 ATP binding F ; plasma membrane C ; ATP catabolic process P ; integral component of membrane C ; ATPase activity, coupled to transmembrane movement of substances F ; ATP-binding cassette transporter complex C ABC transporter Chr6.57714612 G, A 3.42E-07 Sobic.006G237200 57856599– 57860447 141.987 ATPase activity, coupled to transmembrane movement of substances F ; GINS complex C ; dopamine neurotransmitter receptor activity, coupled via Gi/Go F ATP synthase subunit D Chr9.S8773750 G, A 3.22E-07 Sobic.009G071800 8621987– 8624768 148.982 6-phosphofructokinase activity F ; ATP binding F ; Plasma membrane C ; 6-phosphofructokinase complex C ; fructose 6-phosphate metabolic process P ; glycolysis P ; phosphorylation P Phosphofructokinase (Continued on next page)