中国农业科学

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最新录用:黑龙江省和海南省PWL基因家族在稻瘟病菌中的分布及变异

刘瑞1,赵羽涵1,付忠举1,顾欣怡1,王艳霞1,靳学慧1,杨莹1,吴伟怀2,张亚玲1
  

  1. 1黑龙江八一农垦大学/黑龙江省植物抗性研究中心,黑龙江大庆 163319;2中国热带农业科学院环境与植物保护研究所,海口 571101
  • 发布日期:2022-09-29

Distribution and Variation of PWL Gene Family in Rice Magnaporthe oryzae from Heilongjiang Province and Hainan Province  #br#

LIU Rui1, ZHAO YuHan1, FU ZhongJu1, GU XinYi1, WANG YanXia1, JIN XueHui1, Yang YING1, WU WeiHuai2, ZHANG YaLing1 #br#   

  1. 1College of Agronomy, Heilongjiang Bayi Agricultural University/Heilongjiang Plant Resistance Research Center, Daqing 163319, Heilongjiang; 2Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101
  • Online:2022-09-29

摘要: 【目的】了解不同稻瘟病菌(Magnaporthe oryzae)菌株群体中PWL家族的分布和变异特征,为研究不同稻瘟病菌群体的遗传多样性及特异性提供依据。【方法】通过参考NCBI中公布的无毒基因序列分别对PWL基因家族的启动子区和CDS区设计特异性引物共8对,对2020年采自黑龙江省和海南省不同地区的397个稻瘟病菌单孢分离菌株提取DNA,进行无毒基因的PCR扩增并通过琼脂糖凝胶电泳检测,从检测结果中分别选取囊括不同地区的代表菌株对扩增片段进行测序分析。测序结果与NCBI中相应无毒基因启动子区和CDS区的碱基与氨基酸序列进行比较分析。【结果】在PCR电泳检测结果中,PWL1在所有菌株中均未检测;PWL2、PWL3PWL4在黑龙江省和海南省中均扩增出特异性片段,说明这3种基因在两省中均有分布并分别存在不同的分布频率与变异类型。其中PWL2在黑龙江省和海南省中分布频率最高,分别为98.14%和100%;PWL3PWL4在两省中的分布频率具有显著差异,这2种基因在黑龙江菌株中频率分别为89.30%和82.79%,而在海南菌株中均为5.49%。通过对无毒基因组合进行分析,结果显示,组合类型可分为5种,分别为PWL2PWL3PWL2+PWL3PWL2+PWL4PWL2+PWL3+PWL4。其中黑龙江菌株含有所有组合类型,海南菌株仅含有2种,说明黑龙江菌株较海南菌株相比无毒基因型种类较为丰富。通过对PWL基因家族的PCR产物测序结果发现,PWL基因家族在启动子区和CDS区变异位点丰富,以点突变和缺失为主要变异类型划分为9种,且不同群体来源菌株的变异类型具有特异性和一致性。其中PWL2检测出5种变异类型PWL2 -(1,2,3,4,5),碱基序列变化导致氨基酸序列发生错义突变;PWL3PWL4分别检测出2种变异类型,分别为PWL3-(1,2)和PWL4-(1,2),均发生移码突变使后面氨基酸发生变化,导致翻译提前终止。【结论】不同群体来源的稻瘟病菌菌株中PWL基因家族的分布和变异类型具有地域差异性,且变异位点丰富。


关键词: 稻瘟病菌, PWL基因家族, 变异, 无毒基因

Abstract: 【ObjectiveUnderstanding the distribution and variation characteristics of PWL family in different rice blast strain populations is of great significance for studying the genetic diversity and specificity of different rice blast strain populations. MethodIn this study, 8 pairs of specific primers were designed for the promoter region and CDS region of PWL gene family according to the avirulence (Avr) gene sequences published in NCBI. DNA was extracted from 397 onospora oryzae isolates collected from different regions of Heilongjiang and Hainan provinces in 2020, and the avirulence (Avr) gene were amplified by PCR and detected by agarose gel electrophoresis. Representative strains from different regions were selected from the detection results and the amplified fragments were sequenced. The sequencing results were compared with the base and amino acid sequences of the promoters and CDS regions of the corresponding avirulence (Avr) gene in NCBI.ResultThe results of PCR electrophoresis showed that PWL1 was not detected in all strains; specific fragments of PWL2, PWL3 and PWL4 were amplified in Heilongjiang and Hainan provinces, indicating that these three genes were distributed in the two provinces with different distribution frequencies and variation types. The distribution frequency of PWL2 was the highest in Heilongjiang Province and Hainan Province, with 98.14% and 100%, respectively. The distribution frequencies of PWL3 and PWL4 in the two provinces were significantly different, with 89.30% and 82.79% of the two genes in the Heilongjiang strain and 5.49% in the Hainan strain, respectively. Through the analysis of avirulence (Avr) gene combinations, the results showed that the combinations could be divided into five types, which were PWL2, PWL3, PWL2+PWL3, PWL2+PWL4, PWL2+PWL3+PWL4. Among them, the Heilongjiang strain contained all combination types, while the Hainan strain contained only two, indicating that the Heilongjiang strain was richer in avirulent genotypes than the Hainan strain. Sequencing of the PCR products of PWL gene family showed that the PWL gene family has abundant mutation sites in promoter region and CDS region, which can be divided into 9 types with point mutation and deletion as the main mutation types, and the mutation types of different strains from different populations are specific and consistent. Among them, PWL2 detected five types of variation PWL2- (1, 2, 3, 4, 5), and the base sequence changes lead to amino acid sequence missense mutations. Two variants were detected in PWL3 and PWL4, respectively, which were PWL3- (1, 2) and PWL4- (1, 2). Frameshift mutations occurred in both PWL3 and PWL4, which changed the following amino acids, leading to premature termination of translation.ConclusionThe distribution and variation types of PWL gene family in different populations of blast strains showed regional differences, and the variation sites were abundant.


Key words: Magnaporthe oryzae,  , PWL , gene family,  , mutation,  , virulence gene