中国农业科学 ›› 2016, Vol. 49 ›› Issue (10): 1946-1959.doi: 10.3864/j.issn.0578-1752.2016.10.011

• 园艺 • 上一篇    下一篇

草莓果实不同发育时期的蛋白磷酸化水平

吕晓苏,李宇轩,苗 英,陈良珂,沈元月,秦 岭,邢 宇   

  1. 北京农学院植物科学技术学院/农业应用新技术北京市重点实验室,北京102206
  • 收稿日期:2015-12-25 出版日期:2016-05-16 发布日期:2016-05-16
  • 通讯作者: 邢宇,E-mail:xingyu@bua.edu.cn
  • 作者简介:吕晓苏,Tel:010-80797229;E-mail:lvxiaosu6@163.com
  • 基金资助:
    国家自然科学基金(31370323)、北京市教委青年拔尖人才培育计划(CIT&TCD201404098)、北京市属高等学校创新团队建设与教师职业发展计划(IDHT20140509)

Analysis of Protein Phosphorylation Level at Different Developmental Stages of Strawberry Fruit

Lü Xiao-su, LI Yu-xuan, MIAO Ying, CHEN Liang-ke, SHEN Yuan-yue, QIN Ling, XING Yu   

  1. College of Plant Science and Technology, Beijing University of Agriculture/Beijing Key Laboratory for Agricultural Application and New Technique, Beijing 102206
  • Received:2015-12-25 Online:2016-05-16 Published:2016-05-16

摘要: 【目的】通过分析草莓果实生长发育过程中蛋白磷酸化水平的变化以期揭示蛋白磷酸化在果实生长发育成熟衰老过程中的作用。【方法】以iTraq(isobaric tags for relative and absolute quantification)定量蛋白质组学结合LC-MS/MS(liquid chromatography-mass spectrometry)的方法对草莓果实的5个不同发育时期(小绿果时期、大绿果时期、白果时期、果实成熟期、果实成熟后期)的蛋白磷酸化水平进行综合分析,并对这些鉴定到的磷酸化蛋白进行生物过程分类、亚细胞定位分类和分子功能分类。通过综合分析多个数据库的比对结果,对所鉴定的磷酸化蛋白进行功能的预测。【结果】不同发育时期的磷酸化蛋白有所差异,并且在大绿果时期到果实成熟期磷酸化差异蛋白总数比其他时期显著增加,其中,多数的磷酸化蛋白参与生长发育调控。生物过程分类结果显示,这些磷酸化蛋白多数集中在植物信号转导途径和糖代谢途径中,其中,参与信号转导途径的有17个,参与糖代谢生物过程的有8个。属于MAPK级联途径的有MAPKKK家族的101308592、MAPK家族的470122684和596127083。596127083的磷酸化水平在各个发育时期较为稳定,101308592随发育时期磷酸化水平逐渐升高,而470122684的磷酸化水平从软果期开始急剧下降。亚细胞定位分类结果显示,多数磷酸化蛋白定位在细胞核和细胞质中。分子功能分类结果显示,多数磷酸化蛋白具有转录调节和磷酸化去磷酸化的分子功能,鉴定出与生长发育调节相关的磷酸化蛋白有24个。其中,具有转录调控功能的有4个,参与细胞分裂的有6个,还有一部分磷酸化蛋白与调控生长发育的激素的响应有关,除此之外,还鉴定到3个与果实的成熟软化相关的磷酸化蛋白。另外,一部分蛋白有多种磷酸化修饰方式,其中,SNF1相关蛋白激酶β亚基有3种磷酸化修饰,且其磷酸化水平各不相同。【结论】同种蛋白可能同时存在不止一种磷酸化修饰方式。不同的磷酸化修饰方式的作用不尽相同。不同的时期占主导地位的修饰方式也不尽相同。磷酸化蛋白不仅参与转录调节和细胞分裂分化,还参与果实发育过程中对植物激素的响应和糖的代谢积累,甚至参与果实成熟软化的调节。另外,101308592和470122684可能参与果实生长发育的调控。总之,蛋白磷酸化修饰在草莓果实生长发育过程中起重要的调控作用。

关键词: 草莓, 果实发育, iTraq标记定量蛋白质组学, 蛋白磷酸化, 发育调控

Abstract: 【Objective】The changes of protein phosphorylation level during the growth and development of strawberry were analyzed in order to reveal the effect of protein phosphorylation on the growth and development of fruit during ripening and senescence.【Method】In this experiment, the protein phosphorylation level of strawberry fruit (Small green fruit stage, big green fruit stage, mature white stage, soft fruit stage, over-soft fruit stage) was analyzed by using iTRAQ-based (isobaric tags for relative and absolute quantification) quantitative proteomic and LC-MS/MS (liquid chromatography-mass spectrometry) methods. And the biological process classification, subcellular localization classification and molecular functional classification of these proteins were identified. The function of the phosphorylated proteins was predicted by comprehensive analysis of the results of multiple databases.【Result】 The results showed that the phosphorylation proteins at different developmental stages were different. During the period of big green fruit stage to soft fruit stage, the total number of phosphorylated protein and the number of proteins involved in the regulation of growth and development are more than at other developmental stage. Biological process classification results showed that most of these phosphorylated proteins were concentrated in the plant signal transduction pathway and the pathway of glucose metabolism. There were 17 phosphorylated proteins involved in signal transduction pathways, and 8 of them were involved in the process of glucose metabolism. Belonging to the MAPK cascade pathway are 101308592, 470122684, and 596127083. The phosphorylation level of 596127083 was relatively stable at various development stages, and 101308592 gradually increased with the development of phosphorylation, While the phosphorylation level of 470122684 began to decrease sharply from the soft fruit period. The results of subcellular localization showed that most of the phosphorylated proteins were localized in the nucleus and cytoplasm. Molecular functional classification showed that most of the phosphorylated proteins had the function of transcription regulation and phosphorylation. In this study, 24 phosphorylated proteins related to growth and development regulation were identified. Among them, four had the function of transcriptional regulation, six were involved in cell division, and there was also a part of the phosphorylated proteins involved in the regulation of the growth and development of hormone response. In addition, this study also identified 3 phosphorylated proteins related to the ripening and softening of fruit. In addition, a part of the protein has a variety of phosphorylation modification, SNF1 related protein kinase beta subunit has three kinds of phosphorylation modification, and its phosphorylation level is not the same.【Conclusion】There may be more than one kind of phosphorylation modification in the same kind of protein. Different phosphorylation modification methods are not the same. The dominant mode of modification in different periods is not only the same. Phosphorylation is not only involved in the regulation of transcription and cell division and differentiation, but also in response to plant hormones and the accumulation of sugars during fruit development. Even involved in the regulation of fruit ripening and softening.101308592 and 470122684 are likely to be involved in the regulation of fruit growth and development. In short, protein phosphorylation modification plays an important role in the growth and development of strawberry.

Key words: strawberry, fruit development, iTRAQ-based quantitative proteomic, phosphorylation, developmental regulation