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Journal of Integrative Agriculture  2020, Vol. 19 Issue (3): 768-774    DOI: 10.1016/S2095-3119(19)62677-8
Special Issue: 植物病理合辑Plant Protection—Plant Pathology 植物病毒合辑Plant Virus
Plant Protection Advanced Online Publication | Current Issue | Archive | Adv Search |
Prevalence and genetic diversity of grapevine fabavirus isolates from different grapevine cultivars and regions in China
FAN Xu-dong, ZHANG meng-yan, ZHANG Zun-ping, REN Fang, HU Guo-jun, DONG Ya-feng
National Center for Eliminating Viruses from Deciduous Fruit Tree, Research Institute of Pomology, Chinese Academy of Agricultural Sciences, Xingcheng 125100, P.R.China
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Abstract  
A total of 288 grapevine samples of 61 different grapevine cultivars, collected from 22 provinces and regions, were analyzed by reverse transcription-PCR (RT-PCR) for the presence of grapevine fabavirus (GFabV).  PCR detection results showed the incidences of GFabV were 12.8% (30/235) and 48.1% (25/52) in the asymptomatic and symptomatic vines, respectively.  The genetic diversity of GFabV isolates was analyzed based on partial nucleotide and encoded amino acid sequences of the RNA1 and RNA2 polyprotein genes.  Phylogenetic analyses of the RNA1 and RNA2 gene sequences divided the GFabV isolates into five well-defined groups.  Groups 1, 2, and 4 comprised only Chinese isolates.  This article represents the first report for the prevalence and genetic diversity of GFabV in grapevines grown in China.
Keywords:  GFabV        RT-PCR        polyprotein gene        phylogenetic analysis  
Received: 14 January 2019   Accepted:
Fund: This study was supported by the National Key R&D Program of China (2018YFD0201301), the earmarked fund for the China Agriculture Research System (CARS-29-bc-1) and the Fundamental Research Funds for Central Non-profit Scientific Institutions, China.
Corresponding Authors:  Correspondence DONG Ya-feng, Tel: +86-429-3598279, E-mail: yfdong@163.com   
About author:  FAN Xu-dong, E-mail: fanxudong@caas.cn;

Cite this article: 

FAN Xu-dong, ZHANG meng-yan, ZHANG Zun-ping, REN Fang, HU Guo-jun, DONG Ya-feng. 2020. Prevalence and genetic diversity of grapevine fabavirus isolates from different grapevine cultivars and regions in China. Journal of Integrative Agriculture, 19(3): 768-774.

Al Rwahnih M, Alabi O J, Westrick N M, Golino D, Rowhani A. 2016. Near-complete genome sequence of grapevine fabavirus, a novel putative member of the genus Fabavirus. Genome Announcements, 4, doi: 10.1128/genomeA.00703-16
Fan X D, Dong Y F, Zhang Z P, Ren F, Hu G J, Li Z N, Zhou J. 2016a. First report of Grapevine Pinot gris virus from grapevines in China. Plant Disease, 100, doi: 10.1094/PDIS-08-15-0913-PDN
Fan X D, Hong N, Dong Y F, Ma Y X, Zhang Z P, Ren F, Hu G J, Zhou J, Wang G P. 2015. Genetic diversity and recombination analysis of grapevine leafroll-associated virus 1 from China. Archives of Virology, 160, 1669–1678.
Fan X D, Hong N, Zhang Z P, Ren F, Hu G J, Li Z N, Zhou J. 2016b. Identification of a divergent variant of grapevine berry inner necrosis virus in grapevines showing chlorotic mottling and ring spot symptoms. Archives of Virology, 161, 2025–2027.
Fan X D, Zhang Z P, Ren F, Hu G J, Li Z N, Dong Y F. 2017a. First report of grapevine fabavirus in grapevines in China. Plant Disease, 101, doi: 10.1094/PDIS-10-16-1479-PDN
Fan X D, Zhang Z P, Ren F, Hu G J, Zhou J, Li Z N, Wang G P, Dong Y F. 2017b. Occurrence and genetic diversity of grapevine berry inner necrosis virus from grapevines in China. Plant Disease, 101, 144–149.
Ferrer R M, Escriu F M, Guerri J L, Moreno P, Rubio L. 2008. New molecular methods for identification of broad bean wilt virus 1. Molecular and Cellular Probes, 22, 223–227.
He Y, Cai L, Zhou L L, Yang Z K, Hong N, Wang G P, Li S F, Xu W X. 2017. Deep sequencing reveals the first fabavirus infecting peach. Scientific Reports, 7, doi: 10.1038/s41598-017-11743-7
Jo Y, Song M K, Choi H, Park J S, Lee J W, Cho W K. 2017. First report of Grapevine fabavirus in diverse Vitis species in Korea. Plant Disease, 101, doi: 10.1094/PDIS-04-17-0513-PDN
King A M Q, Lefkowitz E J, Mushegian A R, Adams M J, Dutilh B E, Gorbalenya A E, Harrach B, Harrison R L, Junglen S, Knowles N J, Kropinski  A M, Krupovic M, Kuhn J H, Nibert M L, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell S G, Simmonds P, Varsani A. 2018. Changes to taxonomy and the international code of virus classifcation and nomenclature ratifed by the International Committee on Taxonomy of Viruses (2018). Archives of Virology, 163, 2601–2631.
Lyu M D, Li X M, Guo R, Li M J, Liu X M, Wang Q, Cheng Y Q. 2014. Prevalence and distribution of Grapevine leafroll-associated virus 7 in China detected by an improved reverse transcription polymerase chain reaction assay. Plant Pathology, 63, 1168–1176.
MacKenzie D J, Mclean M A, Mukerji S, Grenn M. 1997. Improved RNA extraction from woody plants for the detection of viral pathogens by reverse transcription-polymerase chain reaction. Plant Disease, 81, 222–226.
Martin D P, Lemey P, Lott M, Moulton V, Posada D, Leveuvre P. 2010. RDP3: A flexible and fast computer program for analyzing recombination. Bioinformatics, 26, 2462–2463.
Martelli G P. 2014. Grapevine-infecting viruses. Journal of Plant Pathology, 96, 7–8.
Nolasco G, Mansinho A, Santos M T, Soares C, Sequeira Z, Correia P K, Sequeira, O A. 2000. Large scale evaluation of primers for diagnosis of rupestris stems pitting-associated virus-1. European Journal of Plant Pathology, 106, 311–318.
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular evolutionary genetics analysis Version 6.0. Molecular Biology and Evolution, 30, 2725–2729.
Terlizzi F, Li C, Ratti C, Qiu W, Credi R, Meng B. 2011. Detection of multiple sequence variants of grapevine rupestris stem pitting-associated virus using primers targeting the polymerase domain and partial genome sequencing of a novel Variant. Annals of Applied Biology, 159, 478–490.
Villamor D E V, Pillai S S, Eastwell K C. 2017. High throughput sequencing reveals a novel fabavirus infecting sweet cherry. Archives of Virology, 162, 811–816.
Zhou J, Fan X, Dong Y, Zhang Z, Ren F, Hu G J. 2015. Detection and genetic variation analysis of grapevine fanleaf virus (GFLV) isolates in China. Archives of Virology, 160, 2661–2667.
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